Alireza Karbalayghareh
Alireza Karbalayghareh
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ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Single-cell chromatin accessibility profiling has emerged as a powerful approach to understand cellular heterogeneity and gene …
Alireza Karbalayghareh
,
Multiple Authors
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DOI
Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
Predicting chromatin contact maps from 1D epigenomic signals remains a challenging problem in computational biology. Here we present …
Alireza Karbalayghareh
,
Christina S. Leslie
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DOI
Chromatin interaction aware gene regulatory modeling with graph attention networks
Linking distal enhancers to genes and modeling their impact on target gene expression are longstanding unresolved problems in …
Alireza Karbalayghareh
,
Merve Sahin
,
Christina S. Leslie
PDF
DOI
Optimal Bayesian transfer learning
Transfer learning has recently attracted significant research attention, as it simultaneously learns from different source domains, …
Alireza Karbalayghareh
,
Xiaoning Qian
,
Edward R. Dougherty
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