Alireza Karbalayghareh
Alireza Karbalayghareh
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Publications
Type
Conference paper
Journal article
Preprint
Date
2025
2024
2023
2022
2018
2017
Alireza Karbalayghareh
,
Multiple Authors
(2025).
Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells
. bioRxiv.
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DOI
Alireza Karbalayghareh
,
Multiple Authors
(2024).
ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
. Nat Commun.
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DOI
Alireza Karbalayghareh
,
Multiple ENCODE Consortium Authors
(2023).
An encyclopedia of enhancer-gene regulatory interactions in the human genome
. bioRxiv.
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DOI
Alireza Karbalayghareh
,
Christina S. Leslie
(2023).
Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
. Genome Biol.
PDF
DOI
Alireza Karbalayghareh
,
Merve Sahin
,
Christina S. Leslie
(2022).
Chromatin interaction aware gene regulatory modeling with graph attention networks
. Genome Res.
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DOI
Alireza Karbalayghareh
,
Xiaoning Qian
,
Edward R. Dougherty
(2018).
Optimal Bayesian transfer learning
. IEEE Transactions on Signal Processing.
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DOI
Alireza Karbalayghareh
,
Ulisses Braga-Neto
,
Edward R. Dougherty
(2017).
Classification of Gaussian trajectories with missing data in Boolean gene regulatory networks
. In
ICASSP
.
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