News

Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells (DynaVelo) is published in Nature Biotechnology.

Our preprint scDIVA: semi-supervised integration and fine-grained annotation of tumor-immune single-cell atlases, led by Viraj Rapolu, is on bioRxiv.

HiC2Self: Self-supervised denoising for bulk and single-cell Hi-C contact maps, with Rui Yang and Christina Leslie, is published in Science Advances.

An encyclopedia of human enhancer–gene regulatory interactions, on which I am a co-first author, is published in Nature.

Poster presentation at the New York Symposium on Immune Cell Engineering and Reprogramming.

Our preprint DoFormer: Causal Transformer for Gene Perturbation, with Evan Paull and Andrea Califano, is on bioRxiv.

Poster presentation at the AI in Biology Symposium, Cold Spring Harbor Laboratory.

Our collaborative work on SPEN loss in extrafollicular diffuse large B-cell lymphoma, led by the Melnick lab, is published in Cancer Discovery.

Our perspective Predicting the regulatory genome, with Sarthak Tiwari and Christina Leslie, is published in Nature Reviews Genetics.

Attended CZ Biohub NY Mini Workshop hosted by Yale Medicine, New Haven, CT.