Alireza Karbalayghareh
Alireza Karbalayghareh
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Christina S. Leslie
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Deep dynamical models of single-cell multiomic velocities predict loss-of-function and rescue perturbations in B cells
scDIVA: semi-supervised integration and fine-grained annotation of tumor-immune single-cell atlases
HiC2Self: Self-supervised denoising for bulk and single-cell Hi-C contact maps
An encyclopedia of human enhancer–gene regulatory interactions
SPEN Loss Drives Extrafollicular Diffuse Large B-cell Lymphoma with Female-Specific Lethality and Therapeutic Vulnerabilities
Predicting the regulatory genome
ChromaFold predicts the 3D contact map from single-cell chromatin accessibility
Epiphany: predicting Hi-C contact maps from 1D epigenomic signals
Chromatin interaction–aware gene regulatory modeling with graph attention networks
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